PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016495475.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 273aa    MW: 30183.3 Da    PI: 8.6984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016495475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_016495475.1 101 FSCNYCQRKFYSSQALGGHQNAH 123
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-697129No hitNo description
PROSITE profilePS5015711.427101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKFPTSDNSC TSLKVEAPFL SPTTVLSNFQ NKLQSEQKME SQTTEEVPQN QRTDEQENND  60
LILDLSLCNT DHLFKSNIQT SSSSDPNSRG NNNNETEPRV FSCNYCQRKF YSSQALGGHQ  120
NAHKRERTMA KRGQKINSAA ANFGYDKYSS MASLPLHGSF NRSLGIQVHS MIHKSSSPFG  180
APLYGHPGWS IRRPIDQQPA IGRLAPPDCY SNNTYNGGTS SGGGAARFDN NIQKFPTVVD  240
GISAYRWDSG GGPHISKSNN QEELKKLDLS LKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771767.10.0PREDICTED: zinc finger protein 1-like
RefseqXP_016495475.10.0PREDICTED: zinc finger protein 1-like
SwissprotQ392621e-40ZFP3_ARATH; Zinc finger protein 3
TrEMBLK4BLK91e-100K4BLK9_SOLLC; Uncharacterized protein
STRINGSolyc03g117070.1.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-38zinc finger protein 3